=> Bootstrap dependency digest>=20010302: found digest-20121220
===> Building for hmmer-3.0
cd easel;  /usr/pkg/bin/bmake libeasel.a
cc -I. -I. -O2 -march=i586 -msse2  -o easel.o -c easel.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_alphabet.o -c esl_alphabet.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_cluster.o -c esl_cluster.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_dirichlet.o -c esl_dirichlet.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_distance.o -c esl_distance.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_dmatrix.o -c esl_dmatrix.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_exponential.o -c esl_exponential.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_fileparser.o -c esl_fileparser.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_gamma.o -c esl_gamma.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_getopts.o -c esl_getopts.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_gev.o -c esl_gev.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_gumbel.o -c esl_gumbel.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_histogram.o -c esl_histogram.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_hmm.o -c esl_hmm.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_hyperexp.o -c esl_hyperexp.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_keyhash.o -c esl_keyhash.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_minimizer.o -c esl_minimizer.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_mixgev.o -c esl_mixgev.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_mpi.o -c esl_mpi.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_msa.o -c esl_msa.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_msacluster.o -c esl_msacluster.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_msashuffle.o -c esl_msashuffle.c
cc -I. -I. -O2 -march=i586 -msse2  -o esl_msaweight.o -c esl_msaweight.c
assertion "getTypeSizeInBits(SrcTy) <= getTypeSizeInBits(Ty) && "getNoopOrZeroExtend cannot truncate!"" failed: file "/usr/src/external/bsd/llvm/lib/libLLVMAnalysis/../../dist/llvm/lib/Analysis/ScalarEvolution.cpp", line 2845, function "const llvm::SCEV *llvm::ScalarEvolution::getNoopOrZeroExtend(const llvm::SCEV *, llvm::Type *)"
Stack dump:
0.	Program arguments: /usr/bin/clang -cc1 -triple i386--minix-elf32 -emit-obj -disable-free -main-file-name esl_msaweight.c -mrelocation-model static -mdisable-fp-elim -masm-verbose -mconstructor-aliases -munwind-tables -target-cpu i586 -target-feature +sse2 -target-linker-version 2.23.2 -coverage-file /usr/pkgsrc/work/biology/hmmer/work/hmmer-3.0/easel/esl_msaweight.o -resource-dir /usr/bin/../lib/clang/3.4 -I . -I /usr/pkgsrc/work/biology/hmmer/work/.buildlink/include -O2 -fdebug-compilation-dir /usr/pkgsrc/work/biology/hmmer/work/hmmer-3.0/easel -ferror-limit 19 -fmessage-length 0 -mstackrealign -fobjc-runtime=gnustep -fdiagnostics-show-option -vectorize-loops -vectorize-slp -o esl_msaweight.o -x c esl_msaweight.c 
1.	<eof> parser at end of file
2.	Per-module optimization passes
3.	Running pass 'Function Pass Manager' on module 'esl_msaweight.c'.
4.	Running pass 'Loop Pass Manager' on function '@esl_msaweight_PB'
5.	Running pass 'Loop Vectorization' on basic block '%for.body226'
clang: error: unable to execute command: Abort trap (core dumped)
clang: error: clang frontend command failed due to signal (use -v to see invocation)
clang version 3.4 (branches/release_34 195771)
Target: i386--minix-elf32
Thread model: posix
clang: note: diagnostic msg: PLEASE submit a bug report to http://llvm.org/bugs/ and include the crash backtrace, preprocessed source, and associated run script.
clang: note: diagnostic msg: Error generating preprocessed source(s).
*** Error code 254

Stop.
bmake: stopped in /usr/pkgsrc/work/biology/hmmer/work/hmmer-3.0/easel
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/work/biology/hmmer/work/hmmer-3.0
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/hmmer
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/hmmer