=> Bootstrap dependency digest>=20010302: found digest-20121220 => Checksum SHA1 OK for hmmer-3.0.tar.gz => Checksum RMD160 OK for hmmer-3.0.tar.gz ===> Installing dependencies for hmmer-3.0 ===> Overriding tools for hmmer-3.0 ===> Extracting for hmmer-3.0 ===> Patching for hmmer-3.0 => Applying pkgsrc patches for hmmer-3.0 ===> Creating toolchain wrappers for hmmer-3.0 ===> Configuring for hmmer-3.0 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version configure: Configuring HMMER for your system. checking build system type... i386-elf32-minix checking host system type... i386-elf32-minix configure: Full HMMER source distribution - using full configuration checking for i386-elf32-minix-gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for C compiler vendor... gnu checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... no checking whether pthreads work with -pthreads... no checking whether pthreads work with -mthreads... no checking for the pthreads library -lpthread... no checking whether pthreads work with --thread-safe... no checking whether pthreads work with -mt... no checking for pthread-config... yes no checking for i386-elf32-minix-gcc... (cached) cc checking whether we are using the GNU C compiler... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to accept ISO C89... (cached) none needed checking how to run the C preprocessor... cc -E checking for C compiler vendor... (cached) gnu checking for cc option to accept ISO C99... none needed checking for cc option to accept ISO Standard C... (cached) none needed checking for i386-elf32-minix-ranlib... no checking for ranlib... ranlib checking for ar... /usr/pkgsrc/work/biology/hmmer/work/.wrapper/bin/ar checking whether your make is GNU make... nope, assuming sysv make. checking whether C compiler accepts -msse2... yes checking compiler support for sse2 cast functions... yes checking whether SSE2 is supported... yes checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes configure: Activating Intel/AMD SSE optimized DP implementation checking compiler support --start-group... yes checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for sys/types.h... (cached) yes checking sys/sysctl.h usability... yes checking sys/sysctl.h presence... yes checking for sys/sysctl.h... yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking endian.h usability... no checking endian.h presence... no checking for endian.h... no checking whether byte ordering is bigendian... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for mkstemp... yes checking for popen... yes checking for strcasecmp... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/Makefile config.status: creating Makefile config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_sse to src/impl HMMER configuration: compiler: cc -O2 -march=i586 -msse2 linker: -Wl,-R/usr/pkg/lib libraries: DP implementation: sse