=> Bootstrap dependency digest>=20010302: found digest-20121220 => Checksum SHA1 OK for openbabel-2.3.0.tar.gz => Checksum RMD160 OK for openbabel-2.3.0.tar.gz ===> Installing dependencies for openbabel-2.3.0nb16 ========================================================================== The supported build options for openbabel are: wx-gui You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.openbabel (not defined) ========================================================================== => Tool dependency cmake>=2.8.1nb1: found cmake-2.8.12.2nb3 => Build dependency eigen>=2.0beta3: found eigen-2.0.17 => Full dependency libxml2>=2.8.0nb2: found libxml2-2.9.1nb1 ===> Overriding tools for openbabel-2.3.0nb16 ===> Extracting for openbabel-2.3.0nb16 ===> Patching for openbabel-2.3.0nb16 => Applying pkgsrc patches for openbabel-2.3.0nb16 ===> Creating toolchain wrappers for openbabel-2.3.0nb16 ===> Configuring for openbabel-2.3.0nb16 => Fixing CMAKE_MODULE_PATH in CMakeLists.txt -- The C compiler identification is Clang 3.4.0 -- The CXX compiler identification is Clang 3.4.0 System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Check for working C compiler: /usr/pkgsrc/work/biology/openbabel/work/.wrapper/bin/cc System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Check for working C compiler: /usr/pkgsrc/work/biology/openbabel/work/.wrapper/bin/cc -- works -- Detecting C compiler ABI info System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/pkgsrc/work/biology/openbabel/work/.wrapper/bin/c++ System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Check for working CXX compiler: /usr/pkgsrc/work/biology/openbabel/work/.wrapper/bin/c++ -- works -- Detecting CXX compiler ABI info System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Detecting CXX compiler ABI info - done Using included inchi library. -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARIES LIBXML2_INCLUDE_DIR) CMake Warning at CMakeLists.txt:139 (message): libxml2 not found - disabling CML support! -- Could NOT find ZLIB (missing: ZLIB_LIBRARY ZLIB_INCLUDE_DIR) -- /usr/pkg/share/cmake-2.8/Modules/FindwxWidgets.cmake(813): Platform unknown/unsupported. It's neither WIN32 nor UNIX find style. -- Could NOT find wxWidgets (missing: wxWidgets_FOUND) -- Looking for conio.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for conio.h - not found -- Looking for sys/time.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for sys/time.h - found -- Looking for time.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for time.h - found -- Looking for strings.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for strings.h - found -- Looking for rpc/xdr.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for rpc/xdr.h - not found -- Looking for regex.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for regex.h - found -- Looking for C++ include sstream System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for C++ include sstream - found -- Looking for rint System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for rint - not found -- Looking for snprintf System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for snprintf - found -- Looking for sranddev System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for sranddev - not found -- Looking for strcasecmp System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for strcasecmp - found -- Looking for strncasecmp System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for strncasecmp - found -- Looking for dlopen in dl System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for dlopen in dl - not found -- Looking for sys/types.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for sys/types.h - found -- Looking for stdint.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for stdint.h - found -- Looking for stddef.h System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for stddef.h - found -- Check size of clock_t System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Could NOT find Eigen2 (missing: EIGEN2_INCLUDE_DIR) -- Looking for getopt System is unknown to cmake, create: Platform/Minix to use this system, please send your config file to cmake@www.cmake.org so it can be added to cmake -- Looking for getopt - found GUI will not be built CMake Warning (dev) at test/CMakeLists.txt:161 (include): Syntax Warning in cmake code at /usr/pkgsrc/work/biology/openbabel/work/openbabel-2.3.0/cmake/modules/UsePythonTest.cmake:67:14 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:161 (include): Syntax Warning in cmake code at /usr/pkgsrc/work/biology/openbabel/work/openbabel-2.3.0/cmake/modules/UsePythonTest.cmake:67:31 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:161 (include): Syntax Warning in cmake code at /usr/pkgsrc/work/biology/openbabel/work/openbabel-2.3.0/cmake/modules/UsePythonTest.cmake:70:25 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at test/CMakeLists.txt:161 (include): Syntax Warning in cmake code at /usr/pkgsrc/work/biology/openbabel/work/openbabel-2.3.0/cmake/modules/UsePythonTest.cmake:70:39 Argument not separated from preceding token by whitespace. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR -- Build files have been written to: /usr/pkgsrc/work/biology/openbabel/work/openbabel-2.3.0 => Rewrite cmake Dependencies files